Inversion Visualization Software
Prof. Istvan Miklos, from the Bioinformatics Group (http://renyi.hu/staff/bioinf.html) in Alfréd Rényi Institute in Budapest, kindly shared his visualization software for the Breakpoint Graph. It is written in Java.
Usage: java InversionVisualisation file_name
For example: java InversionVisualisation example.txt
The input must be a signed permutation in one line, the numbers separated with a . There is an example in the provided archive.
Select the reality edges on which the reversal should act, and press the button 'Mutate'. You can go forward and backward in the list of generated genomes, and you can delete any of them, too.
After introductory bioinformatics courses and some algorithm courses have been taken.
8.1.-14.1.2018 MA 12-14, TI 10-14, KE 10-14, TO 10-14, PE 10-14.
+ later agreed seminar day on period III.
Grading scale 1..5. Assessment is based on the exercise solutions and on the presentation.
Active attendance in lectures and exercise sessions. Students select a research article on the last lecture and prepare a presentation to be presented in a seminar organized during period III.