Kaisa_2012_3_photo by Veikko Somerpuro

Enrol
11.11.2019 at 16:00 - 9.3.2020 at 23:59
Moodle
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Timetable

Here is the course’s teaching schedule. Check the description for possible other schedules.

DateTimeLocationInfo
Mon 9.3.2020
13:15 - 16:45
Outi Monni, Lars Paulin, Artemis FilippouIntroduction. Next-generation sequencing technologies. Group assignment
Wed 11.3.2020
13:15 - 14:45
Miina OllikainenEpigenetics and epigenomics
Thu 12.3.2020
13:15 - 14:45
Johanna SistonenPharmacogenetics and pharmacogenomics
Tue 17.3.2020
13:15 - 14:00
Antti SajantilaForensic genetics
Wed 18.3.2020
13:15 - 14:45
Päivi SaavalainenSingle cell sequencing technologies
Thu 19.3.2020
13:15 - 14:00
Outi MonniCancer genomics
Thu 19.3.2020
14:00 - 14:45
Outi KilpivaaraNGS in leukemias
Wed 25.3.2020
13:00 - 15:00
Massimiliano GentileNGS data analysis
Wed 1.4.2020
13:15 - 16:45
  • TMED-1 location TBA
Johanna SistonenKeilaniemi, EspooVisit to Blueprint Genetics
Thu 2.4.2020
13:15 - 14:00
Anne SalonenHuman microbiome and metagenomics
Thu 2.4.2020
14:00 - 16:00
Artemis Filippou and Piia-Riitta KarhemoGroup work presentations
Mon 4.5.2020
13:00 - 15:00
EXAM

Description

Students of the Master’s Programme in Translational Medicine, other Master’s and doctoral students.

Basic familiarity with molecular biology concepts is expected.

TMED-910B

The aim of this course is to introduce genome profiling technologies from experiment design, wet-lab experiments and data analysis, and give practical examples on scientific and clinical approaches.
After the course the student will
Understand the basics of genomics and genetics and be able to describe the terminology
Have a basic understanding of the technological aspects of genome profiling technologies and their applications
Understand how the technology can be applied in clinical diagnostics
Be aware of selected literature and research in the field on the local campus

Period IV. The course is arranged annually.

The course consists of 20 hours of lectures given by experienced genome biologists and an

excursion to Blueprint Genetics, a genetic diagnostics company. Lecture details are found on the Moodle page of the course. In the beginning of the course, students are divided into groups of three to five. Each lecturer selects an article that is related to his/her lecture, and the article is posted on the course Moodle pages. Each group will select one article and will present the article to all the students at the beginning of the lecture.

1. Basic concepts in genetics and genomics

2. Next-generation sequencing technologies

3. Next-generation sequencing data analysis

4. Microarray technologies

5. Microarray data analysis

6. Single-cell genomics

7. Genome profiling in cancer research

8. Pharmacogenetics and pharmacogenomics

9. Forensic genomics

10. Bacterial genomes

11. Microbial genomics and metagenomics

12. Excursion to Blueprint Genetics

Lecture slides and supportive reading will be distributed via the Moodle learning environment.

Grading scale 1-5. 85% of attendance in the lectures and a passing grade on the exam are required.

Responsible teacher: docent Outi Monni, PhD

5 cr: TMED-910A Genome profiling and TMED-910C Personalized medicine are compulsory.
6 cr: Select also TMED-910B NG sequencing. TMED-910B NG Sequencing has limited capacity (10 students) and accepts primarily TRANSMED students.

The course consists of contact teaching and lectures, and individual learning requires the students to read supporting material for each course lecture as well as engage in team-based learning in preparing for the group presentations. Distance learning is not possible.

20 h lectures
4 h excursion
2 h exam