Diekmann, Heesterbeek and Britton's book cover

Book-reading course

based on Diekmann, Heesterbeek & Britton: Mathematical tools for understanding infectious disease dynamics (Princeton, 2012)

This course is an introduction to mathematical modelling of the dynamics of infectious diseases in human and other populations. The textbook we use approaches much of the material via problem-solving. After some introductory lectures, the students present sections of the book and discuss the problems (lectures and exercise classes are combined). The course requires self-study.

TOPICS: basic models of epidemics (e.g. SIR); basic reproduction number (R0) and the initial outbreak; vaccination; the final size of an epidemic and time to extinction; stochastic modelling; endemic persistence; evolution of pathogens; epidemics in structured host populations; multi-level mixing; epidemics spreading on networks

RECOMMENDED TO students of the Master programmes LSI (Biomathematics) and MAST (Mathematical modelling)

Anmäl dig
14.8.2017 kl. 09:00 - 13.12.2017 kl. 23:59

Tidsschema

I den här delen hittar du kursens tidsschema. Kontrollera eventuella andra tider i beskrivning.

DatumTidPlats
ons 6.9.2017
12:15 - 14:00
mån 11.9.2017
14:15 - 16:00
ons 13.9.2017
12:15 - 14:00
mån 18.9.2017
14:15 - 16:00
ons 20.9.2017
12:15 - 14:00
mån 25.9.2017
14:15 - 16:00
ons 27.9.2017
12:15 - 14:00
mån 2.10.2017
14:15 - 16:00
ons 4.10.2017
12:15 - 14:00
mån 9.10.2017
14:15 - 16:00
ons 11.10.2017
12:15 - 14:00
mån 16.10.2017
14:15 - 16:00
ons 18.10.2017
12:15 - 14:00
mån 30.10.2017
14:15 - 16:00
ons 1.11.2017
12:15 - 14:00
mån 6.11.2017
14:15 - 16:00
ons 8.11.2017
12:15 - 14:00
mån 13.11.2017
14:15 - 16:00
ons 15.11.2017
12:15 - 14:00
mån 20.11.2017
14:15 - 16:00
ons 22.11.2017
12:15 - 14:00
mån 27.11.2017
14:15 - 16:00
ons 29.11.2017
12:15 - 14:00
mån 4.12.2017
14:15 - 16:00
mån 11.12.2017
14:15 - 16:00
ons 13.12.2017
12:15 - 14:00

Material

Textbook: O. Diekmann, H. Heesterbeek and T. Britton: Mathematical Tools for Understanding Infectious Disease Dynamics. Princeton University Press, 2012; ISBN-10: 0691155399.

In order to participate in this course, you need to have the textbook or have regular access to it. The Kumpula library has three copies for loan in the course book collection, and one extra copy that always remains in the library for use. The book is also available as an ebook through the library of the University of Helsinki. Please honour the copyright and the terms of use of ebooks.

The course will cover the following chapters of the textbook: chapters 1-9, 12 (with the exception of 8.2, but with added material on the evolution of pathogens).

Uppgifterna

Syllabus and presentation assignments

Kursbeskrivningen

EXAM: Written exam with problems similar to the exercises of the textbook. You may use one A4 paper of your own notes ("cheat sheet") in the exam. The final grade is a combination of the exam grade (with weight 2/3) and course activity (presentations, exercises, end-chapter quick tests (no cheat sheet!) with weight 1/3).

FIRST EXAM DATE 14 December 2017 (Thu) 9.15-12.00 in C321
SECOND EXAM DATE 26 January 2018 (Fri) 14.15-17.00 in C122
We can have more exam date(s), please contact me if you want to take the exam later.

Beskrivning

Optional course.

Master's Programme in Life Science Informatics is responsible for the course.

The course belongs to the Mathematics and Applied mathematics module.

The course is available to students from other degree programmes.

BSc courses on differential equations, linear algebra, probability theory

Modelling the dynamics of infectious diseases using a variety of mathematical techniques (differential equations, renewal equations, stochastic models, network models).

Recommended time/stage of studies for completion: 1. or 2. year

Term/teaching period when the course will be offered: varying

This course is an introduction to mathematical modelling of the dynamics of infectious diseases in human and other populations. The topics include the basic models of epidemics (e.g. SIR); the basic reproduction number (R0); vaccination; the final size of an epidemic; persistence; the evolution of pathogens; diseases in small communities; time to extinction; epidemics in structured host populations; multi-level mixing (households); epidemics on networks. The course is given as a book-reading course based on a textbook that approaches much of the material via problem-solving. Lectures and exercise classes are combined; next to traditional lectures, also students present sections of the book and discuss the solutions of the problems.

O. Diekmann, H. Heesterbeek and T. Britton: Mathematical Tools for Understanding Infectious Disease Dynamics. Princeton University Press, 2012; ISBN-10: 0691155399.

Lectures, student presentations, problem solving

Exam and course activity (presentations and problem solving), Course will be graded with grades 1-5

Exam, other methods will be described later